Red de Excelencia Consolider

Publicaciones UMH 2015 2017

1: Mehrshad M, Rodriguez-Valera F, Amoozegar MA, López-García P, Ghai R. The
enigmatic SAR202 cluster up close: shedding light on a globally distributed dark
ocean lineage involved in sulfur cycling. ISME J. 2017 Dec 5. doi:
10.1038/s41396-017-0009-5. [Epub ahead of print] PubMed PMID: 29208946.
2: Cabello-Yeves PJ, Ghai R, Mehrshad M, Picazo A, Camacho A, Rodriguez-Valera F.
Reconstruction of Diverse Verrucomicrobial Genomes from Metagenome Datasets of
Freshwater Reservoirs. Front Microbiol. 2017 Nov 2;8:2131. doi:
10.3389/fmicb.2017.02131. eCollection 2017. PubMed PMID: 29163419; PubMed Central
PMCID: PMC5673642.
3: Cabello-Yeves PJ, Zemskaya TI, Rosselli R, Coutinho FH, Zakharenko AS, Blinov
VV, Rodriguez-Valera F. Genomes of novel microbial lineages assembled from the
sub-ice waters of Lake Baikal. Appl Environ Microbiol. 2017 Oct 27. pii:
AEM.02132-17. doi: 10.1128/AEM.02132-17. [Epub ahead of print] PubMed PMID:
29079621.
4: Shevchenko V, Mager T, Kovalev K, Polovinkin V, Alekseev A, Juettner J,
Chizhov I, Bamann C, Vavourakis C, Ghai R, Gushchin I, Borshchevskiy V, Rogachev
A, Melnikov I, Popov A, Balandin T, Rodriguez-Valera F, Manstein DJ, Bueldt G,
Bamberg E, Gordeliy V. Inward H(+) pump xenorhodopsin: Mechanism and alternative
optogenetic approach. Sci Adv. 2017 Sep 22;3(9):e1603187. doi:
10.1126/sciadv.1603187. eCollection 2017 Sep. PubMed PMID: 28948217; PubMed
Central PMCID: PMC5609834.
5: López-Pérez M, Haro-Moreno JM, Gonzalez-Serrano R, Parras-Moltó M,
Rodriguez-Valera F. Genome diversity of marine phages recovered from
Mediterranean metagenomes: Size matters. PLoS Genet. 2017 Sep 25;13(9):e1007018.
doi: 10.1371/journal.pgen.1007018. eCollection 2017 Sep. PubMed PMID: 28945750;
PubMed Central PMCID: PMC5628999.
6: Cabello-Yeves PJ, Haro-Moreno JM, Martin-Cuadrado AB, Ghai R, Picazo A,
Camacho A, Rodriguez-Valera F. Novel Synechococcus Genomes Reconstructed from
Freshwater Reservoirs. Front Microbiol. 2017 Jun 21;8:1151. doi:
10.3389/fmicb.2017.01151. eCollection 2017. PubMed PMID: 28680419; PubMed Central
PMCID: PMC5478717.
7: Bolhuis H, Martín-Cuadrado AB, Rosselli R, Pašić L, Rodriguez-Valera F.
Transcriptome analysis of Haloquadratum walsbyi: vanity is but the surface. BMC
Genomics. 2017 Jul 3;18(1):510. doi: 10.1186/s12864-017-3892-2. PubMed PMID:
28673248; PubMed Central PMCID: PMC5496347.
8: Martinez-Hernandez F, Fornas O, Lluesma Gomez M, Bolduc B, de la Cruz Peña MJ,
Martínez JM, Anton J, Gasol JM, Rosselli R, Rodriguez-Valera F, Sullivan MB,
Acinas SG, Martinez-Garcia M. Single-virus genomics reveals hidden cosmopolitan
and abundant viruses. Nat Commun. 2017 Jun 23;8:15892. doi: 10.1038/ncomms15892.
PubMed PMID: 28643787; PubMed Central PMCID: PMC5490008.
9: Melnikov I, Polovinkin V, Kovalev K, Gushchin I, Shevtsov M, Shevchenko V,
Mishin A, Alekseev A, Rodriguez-Valera F, Borshchevskiy V, Cherezov V, Leonard
GA, Gordeliy V, Popov A. Fast iodide-SAD phasing for high-throughput membrane
protein structure determination. Sci Adv. 2017 May 12;3(5):e1602952. doi:
10.1126/sciadv.1602952. eCollection 2017 May. PubMed PMID: 28508075; PubMed
Central PMCID: PMC5429034.
10: Haro-Moreno JM, Rodriguez-Valera F, López-García P, Moreira D,
Martin-Cuadrado AB. New insights into marine group III Euryarchaeota, from dark
to light. ISME J. 2017 May;11(5):1102-1117. doi: 10.1038/ismej.2016.188. Epub
2017 Jan 13. PubMed PMID: 28085158; PubMed Central PMCID: PMC5437922.
11: López-Pérez M, Ramon-Marco N, Rodriguez-Valera F. Networking in microbes:
conjugative elements and plasmids in the genus Alteromonas. BMC Genomics. 2017
Jan 5;18(1):36. doi: 10.1186/s12864-016-3461-0. PubMed PMID: 28056800; PubMed
Central PMCID: PMC5217437.

12: Ghai R, Mehrshad M, Mizuno CM, Rodriguez-Valera F. Metagenomic recovery of
phage genomes of uncultured freshwater actinobacteria. ISME J. 2017
Jan;11(1):304-308. doi: 10.1038/ismej.2016.110. Epub 2016 Aug 9. PubMed PMID:
27505348; PubMed Central PMCID: PMC5315475.
13: Mizuno CM, Ghai R, Saghaï A, López-García P, Rodriguez-Valera F. Genomes of
Abundant and Widespread Viruses from the Deep Ocean. MBio. 2016 Jul 26;7(4). pii:
e00805-16. doi: 10.1128/mBio.00805-16. PubMed PMID: 27460793; PubMed Central
PMCID: PMC4981710.
14: López-Pérez M, Kimes NE, Haro-Moreno JM, Rodriguez-Valera F. Not All
Particles Are Equal: The Selective Enrichment of Particle-Associated Bacteria
from the Mediterranean Sea. Front Microbiol. 2016 Jun 22;7:996. doi:
10.3389/fmicb.2016.00996. eCollection 2016. PubMed PMID: 27446036; PubMed Central
PMCID: PMC4916215.
15: Mojica FJ, Rodriguez-Valera F. The discovery of CRISPR in archaea and
bacteria. FEBS J. 2016 Sep;283(17):3162-9. doi: 10.1111/febs.13766. Epub 2016 Jun
15. Review. PubMed PMID: 27234458.
16: López-Pérez M, Rodriguez-Valera F. Pangenome Evolution in the Marine
Bacterium Alteromonas. Genome Biol Evol. 2016 Jun 3;8(5):1556-70. doi:
10.1093/gbe/evw098. PubMed PMID: 27189983; PubMed Central PMCID: PMC4898812.
17: Ivanova EP, López-Pérez M, Webb HK, Ng HJ, Dang TH, Zhukova NV, Mikhailov VV,
Crawford RJ, Rodriguez-Valera F. Thalassospira australica sp. nov. isolated from
sea water. Antonie Van Leeuwenhoek. 2016 Aug;109(8):1091-100. doi:
10.1007/s10482-016-0710-9. Epub 2016 May 14. PubMed PMID: 27180097.
18: Rodriguez-Valera F, Martin-Cuadrado AB, López-Pérez M. Flexible genomic
islands as drivers of genome evolution. Curr Opin Microbiol. 2016 Jun;31:154-160.
doi: 10.1016/j.mib.2016.03.014. Epub 2016 Apr 14. Review. PubMed PMID: 27085300.
19: Vavourakis CD, Ghai R, Rodriguez-Valera F, Sorokin DY, Tringe SG, Hugenholtz
P, Muyzer G. Metagenomic Insights into the Uncultured Diversity and Physiology of
Microbes in Four Hypersaline Soda Lake Brines. Front Microbiol. 2016 Feb
25;7:211. doi: 10.3389/fmicb.2016.00211. eCollection 2016. PubMed PMID: 26941731;
PubMed Central PMCID: PMC4766312.
20: Mehrshad M, Amoozegar MA, Ghai R, Shahzadeh Fazeli SA, Rodriguez-Valera F.
Genome Reconstruction from Metagenomic Data Sets Reveals Novel Microbes in the
Brackish Waters of the Caspian Sea. Appl Environ Microbiol. 2016 Jan
4;82(5):1599-612. doi: 10.1128/AEM.03381-15. PubMed PMID: 26729711; PubMed
Central PMCID: PMC4771326.
21: Zhang CL, Xie W, Martin-Cuadrado AB, Rodriguez-Valera F. Marine Group II
Archaea, potentially important players in the global ocean carbon cycle. Front
Microbiol. 2015 Oct 13;6:1108. doi: 10.3389/fmicb.2015.01108. eCollection 2015.
Review. PubMed PMID: 26528260; PubMed Central PMCID: PMC4602124.
22: León MJ, Rodríguez-Olmos A, Sánchez-Porro C, López-Pérez M, Rodríguez-Valera
F, Soliveri J, Ventosa A, Copa-Patiño JL. Spiribacter curvatus sp. nov., a
moderately halophilic bacterium isolated from a saltern. Int J Syst Evol
Microbiol. 2015 Dec;65(12):4638-43. PubMed PMID: 26394793.
23: Martin-Cuadrado AB, Pašić L, Rodriguez-Valera F. Diversity of the cell-wall
associated genomic island of the archaeon Haloquadratum walsbyi. BMC Genomics.
2015 Aug 13;16:603. doi: 10.1186/s12864-015-1794-8. PubMed PMID: 26268990; PubMed
Central PMCID: PMC4535781.
24: Kimes NE, López-Pérez M, Flores-Félix JD, Ramírez-Bahena MH, Igual JM, Peix
A, Rodriguez-Valera F, Velázquez E. Pseudorhizobium pelagicum gen. nov., sp. nov.
isolated from a pelagic Mediterranean zone. Syst Appl Microbiol. 2015
Jul;38(5):293-9. doi: 10.1016/j.syapm.2015.05.003. Epub 2015 May 29. PubMed PMID:
26078205.
25: Carda-Diéguez M, Mizuno CM, Ghai R, Rodriguez-Valera F, Amaro C. Replicating
phages in the epidermal mucosa of the eel (Anguilla anguilla). Front Microbiol.
2015 Jan 29;6:3. doi: 10.3389/fmicb.2015.00003. eCollection 2015. PubMed PMID:
25688234; PubMed Central PMCID: PMC4310352.
26: Mizuno CM, Rodriguez-Valera F, Ghai R. Genomes of planktonic
Acidimicrobiales: widening horizons for marine Actinobacteria by metagenomics.
MBio. 2015 Feb 10;6(1). pii: e02083-14. doi: 10.1128/mBio.02083-14. PubMed PMID:
25670777; PubMed Central PMCID: PMC4337565.
27: López-Pérez M, Rodriguez-Valera F, Webb HK, Crawford RJ, Ivanova EP.
Correction for López-Pérez et al., Genome Sequence of “Thalassospira australica”
NP3b2T Isolated from St. Kilda Beach, Tasman Sea. Genome Announc. 2015 Jan
22;3(1). pii: e01453-14. doi: 10.1128/genomeA.01453-14. PubMed PMID: 25614566;
PubMed Central PMCID: PMC4319594.